The fastest G{F,T}F-to-BED converter around the block!
A high-performance GTF sorter that uses a lexicographically-based index ordering algorithm, written in Rust and available here.
A high-performance BED-to-GTF converter written in Rust.
BED-to-GFF3 converter that runs in parallel.
A high-performance exon/CDS spliced transcriptome builder from fasta + GTF/GFF.
GTF/GFF per gene non-overlapping exon length calculator.
The post-TOGA processing pipeline
A portable storage-optimized RNA-seq processing pipeline