DATASHEET PhD(c)/BVet. A. Gonzales-Irribarren ─────────────────────────────────────────────────────────────────────────────── One of the few veterinarian/computer-scientists in the world. Have spend six years working at the intersection of healthcare, software, and genomics in the search of stable translational models. Author of the first open-sourced DSL2-flavored whole-genome alignment pipeline, the highest confidence ORF prediction framework to date, and the widely used set of gxf/bed high performance converters. Co-author of TOGA2, the top-performer homology-based gene annotation workflow. Night owl and open-source software advocate, usually fascinated by cancer, computers, and sports. EXPERTISE ─────────────────────────────────────────────────────────────────────────────── ┌──────────┐ │ MEDICINE ├───┐ ┌── applied research └──────────┘ │ │ ┌──────────┐ │ ░░░░░░░░ ├── algorithms │ SOFTWARE ├───┼─ GENOMICS ─┤ └──────────┘ │ ░░░░░░░░ ├── QoL tools ┌──────────┐ │ │ │ GENETICS ├───┘ └── pipelines └──────────┘ OPEN SOURCE ─────────────────────────────────────────────────────────────────────────────── *pipelines *lib/CLI ┌────────────── softmask ────────────────────┐ *co-author │ │ ┌─────┴────┐ ┌── chaintools ──┐ ┌─────────┴─────────┐ │ HOMOLOGY ├──────┼── psltools ────┼─────┤ make_lastz_chains ├───┐ └──────────┘ └── netools ────┘ └───────────────────┘ ├─── TOGA2 │ postoga ──────────┘ ░░░░░░░░░░ ────┬──── ANNOTATION │ ░░░░░░░░░░ ┌─────────────┘ ┌─────┐ │ │ ┌── arktools ───┤ ark │ ┌───────────────┐ ┌── bed2gtf ─┐ ┌──────┐ │ └──┬──┘ │ TRANSCRIPTOME ├─── genepred ─┼── gxf2bed ─┼─┤ xORF ├─┤ │ └───────────────┘ └── gtfsort ─┘ └───┬──┘ │ ┌──────┐ │ │ └───┤ xASM │ │ chromsize │ │ └──┬───┘ │ xloci ├──┴───────────┴───────────┘ fxsplit │ EXPERIENCE ───────────────────────────────────────────────────────┬─────────────────────── 2025/06 → PhD candidate in Computer Science LU ┤ Leipzig, Germany 2024/07 → Bioinformatics Scientist TBG ┤ Frankfurt, Germany 2024/03 → Google SoC Developer Google ┤ Boston, USA 2024/01 → Bioinformatics Intern LIIGH ┤ Queretaro, Mexico 2023/12 → Bachelor in Veterinary Medicine UNMSM ┤ Lima, Peru MISCELLANEOUS ─────────────────────────────────────────────────────────────────────────────── Valedictorian • Veterinary Medicine School at UNMSM ← 2018/03 - 2023/12 Member • Bat1K Consortium ← 2024/07 Member • BatProtect ERC Consortium ← 2024/07 Member • Vetebrate Genome Project Consortium ← 2026/01 First place • International Congress of Biosciences ← 2021/11 Co-Developer • oxbow ← 2024/04 Founder • Circle of Veterinary Studies in Epidemiology ← 2023/06 CONTACT veterinarian | computer scientist ─────────────────────────────────────────────────────────────────────────────── Alejandro Gonzales-Irribarren ▕ alejandrxgzi@gmail.com ▕ GitHub: alejandrogzi